[ Källkod: debian-med ]
Paket: med-bio-dev (3.3)
Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful for development of applications for biological research.
Andra paket besläktade med med-bio-dev
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- dep: med-config (= 3.3)
- Debian Med general config package
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- dep: med-tasks (= 3.3)
- Debian Med tasks for tasksel
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- rec: bio-tradis
- analyse the output from TraDIS analyses of genomic sequences
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- rec: bioperl
- Perl tools for computational molecular biology
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- rec: bioperl-run
- BioPerl wrappers: scripts
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- rec: biosquid
- utilities for biological sequence analysis
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- rec: cwltool
- Common Workflow Language reference implementation
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- rec: libace-perl
- Object-Oriented Access to ACEDB Databases
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- rec: libai-fann-perl
- Perl wrapper for the FANN library
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- rec: libbambamc-dev
- Development files for reading and writing BAM (genome alignment) files
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- rec: libbamtools-dev
- C++ API for manipulating BAM (genome alignment) files
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- rec: libbio-asn1-entrezgene-perl
- parser for NCBI Entrez Gene and NCBI Sequence records
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- rec: libbio-chado-schema-perl
- DBIx::Class layer for the Chado database schema
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- rec: libbio-coordinate-perl
- BioPerl modules for working with biological coordinates
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- rec: libbio-das-lite-perl
- implementation of the BioDas protocol
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- rec: libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
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- rec: libbio-graphics-perl
- Generate GD images of Bio::Seq objects
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- rec: libbio-mage-perl
- Behållarmodul för klasser i MAGE-paketet: MAGE
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- rec: libbio-mage-utils-perl
- Extra modules for classes in the MAGE package: MAGE
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- rec: libbio-primerdesigner-perl
- Perl module to design PCR primers using primer3 and epcr
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- rec: libbio-samtools-perl
- Perl interface to SamTools library for DNA sequencing
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- rec: libbio-scf-perl
- Perl extension for reading and writing SCF sequence files
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- rec: libbio-tools-phylo-paml-perl
- Bioperl interface to the PAML suite
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- rec: libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
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- rec: libbio-tools-run-alignment-tcoffee-perl
- Bioperl interface to T-Coffee
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- rec: libbiococoa-dev
- Bioinformatics framework for GNUstep and Cocoa (development files)
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- rec: libbiojava-java
- Java API to biological data and applications (default version)
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- rec: libbiojava4-java
- Java API to biological data and applications (default version)
också ett virtuellt paket som tillhandahålls av libbiojava4-java
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- rec: libbioparser-dev
- library for parsing several formats in bioinformatics
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- rec: libblasr-dev
- tools for aligning PacBio reads to target sequences (development files)
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- rec: libbpp-core-dev
- Bio++ Core library development files
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- rec: libbpp-phyl-dev
- Bio++ Phylogenetic library development files
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- rec: libbpp-phyl-omics-dev
- Bio++ Phylogenetics library: genomics components (development files)
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- rec: libbpp-popgen-dev
- Bio++ Population Genetics library development files
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- rec: libbpp-qt-dev
- Bio++ Qt Graphic classes library development files
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- rec: libbpp-raa-dev
- Bio++ Remote Acnuc Access library development files
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- rec: libbpp-seq-dev
- Bio++ Sequence library development files
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- rec: libbpp-seq-omics-dev
- Bio++ Sequence library: genomics components (development files)
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- rec: libchado-perl
- database schema and tools for genomic data
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- rec: libconsensuscore-dev
- algorithms for PacBio multiple sequence consensus -- development files
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- rec: libdivsufsort-dev
- libdivsufsort header files
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- rec: libedlib-dev
- library for sequence alignment using edit distance (devel)
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- rec: libfast5-dev
- library for reading Oxford Nanopore Fast5 files -- headers
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- rec: libfastahack-dev
- library for indexing and sequence extraction from FASTA files (devel)
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- rec: libffindex0-dev
- library for simple index/database for huge amounts of small files (development)
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- rec: libfml-dev
- development headers for libfml
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- rec: libfreecontact-dev
- fast protein contact predictor library - development files
också ett virtuellt paket som tillhandahålls av libfreecontact-dev
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- rec: libfreecontact-perl
- fast protein contact predictor - binding for Perl
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- rec: libgatbcore-dev
- development library of the Genome Analysis Toolbox
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- rec: libgenome-dev
- toolkit for developing bioinformatic related software (devel)
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- rec: libgenome-model-tools-music-perl
- module for finding mutations of significance in cancer
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- rec: libgenome-perl
- pipelines, tools, and data management for genomics
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- rec: libgenometools0-dev
- development files for GenomeTools
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- rec: libgff-dev
- GFF/GTF parsing from cufflinks as a library
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- rec: libgkarrays-dev
- library to query large collection of NGS sequences (development)
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- rec: libgo-perl
- perl modules for GO and other OBO ontologies
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- rec: libhmsbeagle-dev
- High-performance lib for Bayesian and Maximum Likelihood phylogenetics (devel)
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- rec: libhts-dev
- development files for the HTSlib
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- rec: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
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- rec: libjebl2-java
- Java Evolutionary Biology Library
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- rec: libjloda-java
- Java library of data structures and algorithms for bioinformatics
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- rec: libkmer-dev
- suite of tools for DNA sequence analysis (development lib)
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- rec: libmems-dev
- development library to support DNA string matching and comparative genomics
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- rec: libminimap-dev
- development headers for libminimap
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- rec: libmuscle-dev
- multiple alignment development library for protein sequences
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- rec: libncbi-vdb-dev
- libraries for using data in the INSDC Sequence Read Archives (devel)
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- rec: libncbi6-dev
- NCBI libraries for biology applications (development files)
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- rec: libncl-dev
- NEXUS Class Library (static lib and header files)
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- rec: libngs-java
- Next Generation Sequencing language Bindings (Java bindings)
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- rec: libngs-sdk-dev
- Next Generation Sequencing language Bindings (development)
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- rec: libnhgri-blastall-perl
- Perl extension for running and parsing NCBI's BLAST 2.x
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- rec: libopenms-dev
- library for LC/MS data management and analysis - dev files
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- rec: libpal-java
- Phylogenetic Analysis Library
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- rec: libpbbam-dev
- Pacific Biosciences binary alignment/map (BAM) library (headers)
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- rec: libpbdata-dev
- tools for handling PacBio sequences (development files)
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- rec: libpbihdf-dev
- tools for handling PacBio hdf5 files (development files)
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- rec: libpbseq-dev
- library for analyzing PacBio sequencing data (development files)
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- rec: libpll-dev
- Phylogenetic Likelihood Library (development)
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- rec: libqes-dev
- DNA sequence parsing library -- development
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- rec: librcsb-core-wrapper0-dev
- development files for librcsb-core-wrapper0
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- rec: librdp-taxonomy-tree-java
- taxonomy tree library from Ribosomal Database Project (RDP)
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- rec: librelion-dev
- C++ API for RELION (3D reconstructions in cryo-electron microscopy)
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- rec: librg-blast-parser-perl
- very fast NCBI BLAST parser - binding for Perl
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- rec: librg-reprof-bundle-perl
- protein secondary structure and accessibility predictor (perl module)
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- rec: librostlab-blast0-dev
- very fast C++ library for parsing the output of NCBI BLAST programs (devel)
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- rec: librostlab3-dev
- C++ library for computational biology (development)
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- rec: libsbml5-dev
- System Biology Markup Language library - development files
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- rec: libseqlib-dev
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
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- rec: libsmithwaterman-dev
- determine similar regions between two strings or genomic sequences (devel)
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- rec: libsnp-sites1-dev
- Static libraries and header files for the package snp-sites
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- rec: libsort-key-top-perl
- Perl module to select and sort top n elements of a list
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- rec: libspoa-dev
- SIMD partial order alignment library (development files)
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- rec: libsrf-dev
- C++ implementation of the SRF format for DNA sequence data
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- rec: libssm-dev
- macromolecular superposition library - development files
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- rec: libssw-dev
- Development headers and static libraries for libssw
också ett virtuellt paket som tillhandahålls av libssw-dev
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- rec: libssw-java
- Java bindings for libssw
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- rec: libstaden-read-dev
- development files for libstaden-read
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- rec: libstatgen-dev
- development files for the libStatGen
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- rec: libswiss-perl
- Perl API to the UniProt database
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- rec: libtabixpp-dev
- C++ wrapper to tabix indexer (development files)
också ett virtuellt paket som tillhandahålls av libtabixpp-dev
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- rec: libtfbs-perl
- scanning DNA sequence with a position weight matrix
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- rec: libthread-pool-dev
- C++ thread pool library (devel)
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- rec: libvcflib-dev
- C++ library for parsing and manipulating VCF files (development)
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- rec: libvibrant6-dev
- NCBI libraries for graphic biology applications (development files)
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- rec: libzerg-perl
- fast perl module for parsing the output of NCBI BLAST programs
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- rec: libzerg0-dev
- development libraries and header files for libzerg
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- rec: mcl
- Markov Cluster algorithm
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- rec: pyfai
- Fast Azimuthal Integration scripts
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- rec: python-biom-format
- Biological Observation Matrix (BIOM) format (Python 2)
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- rec: python-cogent
- framework for genomic biology
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- rec: python-corepywrap
- library that exports C++ mmCIF accessors to Python
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- rec: python-freecontact
- fast protein contact predictor - binding for Python
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- rec: python-htseq
- Python high-throughput genome sequencing read analysis utilities
också ett virtuellt paket som tillhandahålls av python3-htseq
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- rec: python-kineticstools
- detection of DNA modifications (Python 2 library)
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- rec: python-pbcommand
- common command-line interface for Pacific Biosciences analysis modules
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- rec: python-pbcore
- Python 2 library for processing PacBio data files
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- rec: python-pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files -- Python 2 library
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- rec: python-rdkit
- Collection of cheminformatics and machine-learning software
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- rec: python3-airr
- Data Representation Standard library for antibody and TCR sequences
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- rec: python3-bcbio
- library for analysing high-throughput sequencing data
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- rec: python3-biomaj3
- BioMAJ workflow management library
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- rec: python3-biopython
- Python library for bioinformatics (implemented in Python 3)
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- rec: python3-biotools
- Python3 bioinformatics utilities for high-throughput genomic sequencing
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- rec: python3-bx
- library to manage genomic data and its alignment
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- rec: python3-cobra
- constraint-based modeling of biological networks with Python 3
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- rec: python3-csb
- Python framework for structural bioinformatics (Python3 version)
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- rec: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
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- rec: python3-cyvcf2
- VCF parser based on htslib (Python 3)
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- rec: python3-dendropy
- DendroPy Phylogenetic Computing Library (Python 3)
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- rec: python3-fast5
- library for reading Oxford Nanopore Fast5 files -- Python 3
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- rec: python3-gfapy
- flexible and extensible software library for handling sequence graphs
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- rec: python3-gffutils
- Work with GFF and GTF files in a flexible database framework
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- rec: python3-intervaltree-bio
- Interval tree convenience classes for genomic data -- Python 3 library
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- rec: python3-ngs
- Next Generation Sequencing language Bindings (Python3 bindings)
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- rec: python3-pbconsensuscore
- algorithms for PacBio multiple sequence consensus -- Python 3
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- rec: python3-presto
- toolkit for processing B and T cell sequences
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- rec: python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
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- rec: python3-pybel
- Biological Expression Language
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- rec: python3-pyfaidx
- efficient random access to fasta subsequences for Python 3
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- rec: python3-pymummer
- Python 3 interface to MUMmer
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- rec: python3-pyvcf
- Variant Call Format (VCF) parser for Python 3
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- rec: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- rec: python3-screed
- short nucleotide read sequence utils in Python 3
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- rec: python3-sqt
- SeQuencing Tools for biological DNA/RNA high-throughput data
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- rec: python3-treetime
- inference of time stamped phylogenies and ancestral reconstruction (Python 3)
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- rec: r-bioc-biobase
- base functions for Bioconductor
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- rec: r-cran-genetics
- GNU R package for population genetics
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- rec: r-cran-haplo.stats
- GNU R package for haplotype analysis
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- rec: r-cran-phylobase
- GNU R base package for phylogenetic structures and comparative data
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- rec: r-cran-rncl
- GNU R interface to the Nexus Class Library
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- rec: r-cran-rnexml
- GNU R package for semantically rich I/O for the 'NeXML' format
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- rec: ruby-bio
- Ruby tools for computational molecular biology
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- rec: ruby-crb-blast
- Run conditional reciprocal best blast
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- rec: sbmltoolbox
- libsbml toolbox for octave and matlab
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- rec: seqan-dev
- C++ library for the analysis of biological sequences (development)
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- rec: snakemake
- pythonic workflow management system
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- rec: toil
- cross-platform workflow engine
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- sug: bioclipse
- Paketet inte tillgängligt
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- sug: ctdconverter
- Convert CTD files into Galaxy tool and CWL CommandLineTool files
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- sug: galaxy-lib
- Paketet inte tillgängligt
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- sug: libbam-dev
- manipulates nucleotide sequence alignments in BAM or SAM format
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- sug: libbigwig-dev
- Paketet inte tillgängligt
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- sug: libbiod-dev
- Paketet inte tillgängligt
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- sug: libdisorder-dev
- library for entropy measurement of byte streams (devel)
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- sug: libforester-java
- Paketet inte tillgängligt
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- sug: libfreecontact-doc
- documentation for libfreecontact
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- sug: libgoby-java
- Paketet inte tillgängligt
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- sug: libgtextutils-dev
- Gordon Text_utils library (development files)
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- sug: libmilib-java
- library for Next Generation Sequencing (NGS) data processing
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- sug: libmodhmm-dev
- library for constructing, training and scoring hidden Markov models (dev)
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- sug: libnexml-java
- Paketet inte tillgängligt
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- sug: libpbcopper-dev
- data structures, algorithms, and utilities for C++ applications -- header files
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- sug: libqcpp-dev
- Paketet inte tillgängligt
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- sug: libroadrunner-dev
- Paketet inte tillgängligt
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- sug: librostlab-blast-doc
- very fast C++ library for parsing the output of NCBI BLAST programs (doc)
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- sug: librostlab-doc
- C++ library for computational biology (documentation)
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- sug: libsvmloc-dev
- PSORTb adapted library for svm machine-learning library (dev)
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- sug: libswarm2-dev
- Paketet inte tillgängligt
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- sug: mgltools-networkeditor
- Python GUI library for the editing of networks
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- sug: mgltools-pybabel
- molecular structure file access and interpretation
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- sug: mgltools-vision
- Python-based Visual Programming Environment
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- sug: octace-bioinfo
- Paketet inte tillgängligt
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- sug: python-biopython-doc
- Documentation for the Biopython library
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- sug: python-mmtk
- Paketet inte tillgängligt
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- sug: python-pyflow
- lightweight parallel task engine for Python
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- sug: python-roadrunner
- Paketet inte tillgängligt
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- sug: python-screed
- Paketet inte tillgängligt
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- sug: python3-biopython-sql
- Biopython support for the BioSQL database schema (Python 3)
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- sug: python3-cgecore
- Paketet inte tillgängligt
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- sug: python3-consensuscore2
- Paketet inte tillgängligt
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- sug: python3-ctdopts
- Gives your Python tools a CTD-compatible interface
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- sug: python3-ete3
- Paketet inte tillgängligt
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- sug: python3-hyphy
- Paketet inte tillgängligt
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- sug: python3-mirtop
- Paketet inte tillgängligt
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- sug: python3-misopy
- Paketet inte tillgängligt
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- sug: python3-seqcluster
- Paketet inte tillgängligt
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- sug: python3-skbio
- Paketet inte tillgängligt
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- sug: r-bioc-affy
- BioConductor methods for Affymetrix Oligonucleotide Arrays
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- sug: r-bioc-affyio
- BioConductor tools for parsing Affymetrix data files
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- sug: r-bioc-altcdfenvs
- BioConductor alternative CDF environments
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- sug: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
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- sug: r-bioc-biocgenerics
- generic functions for Bioconductor
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- sug: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- sug: r-bioc-biomformat
- GNU R interface package for the BIOM file format
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- sug: r-bioc-biovizbase
- GNU R basic graphic utilities for visualization of genomic data
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- sug: r-bioc-genomicalignments
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- sug: r-bioc-graph
- handle graph data structures for BioConductor
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- sug: r-bioc-hypergraph
- BioConductor hypergraph data structures
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- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
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- sug: r-bioc-makecdfenv
- BioConductor CDF Environment Maker
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- sug: r-bioc-preprocesscore
- BioConductor collection of pre-processing functions
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- sug: r-bioc-rbgl
- R interface to the graph algorithms contained in the BOOST library
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- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- sug: r-bioc-shortread
- GNU R classes and methods for high-throughput short-read sequencing data
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- sug: r-bioc-snpstats
- BioConductor SnpMatrix and XSnpMatrix classes and methods
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- sug: r-bioc-variantannotation
- BioConductor annotation of genetic variants
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- sug: r-bioc-xvector
- BioConductor representation and manpulation of external sequences
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- sug: r-cran-natserv
- GNU R 'NatureServe' Interface
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- sug: r-cran-rentrez
- GNU R interface to the NCBI's EUtils API
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- sug: r-cran-rocr
- GNU R package to prepare and display ROC curves
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- sug: ruby-rgfa
- parse, edit and write GFA format graphs in Ruby
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- sug: vdjtools
- Paketet inte tillgängligt
Hämta med-bio-dev
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
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| all | 17,2 kbyte | 40,0 kbyte | [filförteckning] |