Paket: tree-puzzle (5.3~rc16+dfsg-8)

[ Källkod: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Behöver ett märke till

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• dep: libsprng2

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• rec: tree-puzzle-doc

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• sug: phylip

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Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	167,7 kbyte	404,0 kbyte	[filförteckning]
arm64	155,9 kbyte	384,0 kbyte	[filförteckning]
armel	160,8 kbyte	412,0 kbyte	[filförteckning]
armhf	151,9 kbyte	304,0 kbyte	[filförteckning]
i386	179,4 kbyte	488,0 kbyte	[filförteckning]
mips64el	167,4 kbyte	468,0 kbyte	[filförteckning]
mipsel	167,1 kbyte	449,0 kbyte	[filförteckning]
ppc64el	176,3 kbyte	493,0 kbyte	[filförteckning]
s390x	154,3 kbyte	412,0 kbyte	[filförteckning]