Paket: soapsnp (1.03-4)

[ Källkod: soapsnp  ]

resequencing utility that can assemble consensus sequence of genomes

For getting ideas on the cause of diseases or their response to therapy, and for understanding either for a particular patient, doctors around the globe are starting to look at the genes or the whole genome and how that sequence is different from a healthy / well responding individual.

SOAPsnp is a member of the SOAP (Short Oligonucleotide Analysis Package). The program is a resequencing utility. It assembles the consensus sequence for the genome of a newly sequenced individual based on the alignment of the raw sequencing reads on a known reference. SNPs can then be identified on the consensus sequence through the comparison with the reference.

SOAPsnp uses a method based on Bayes' theorem (the reverse probability model) to call consensus genotype by carefully considering the data quality, alignment, and recurring experimental errors. All these kinds of information was integrated into a single quality score for each base in PHRED scale to measure the accuracy of consensus calling. Currently, it supports the alignment format of SOAPaligner (soap2).

Andra paket besläktade med soapsnp

• dep: libc6 (>= 2.29) [ej i386]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.4) [i386]

• dep: libgcc-s1 (>= 3.0) [ej armel, armhf, i386, mipsel]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• sug: genomics.cn-soapsnp

  Paketet inte tillgängligt

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	46,5 kbyte	114,0 kbyte	[filförteckning]
arm64	41,8 kbyte	94,0 kbyte	[filförteckning]
armel	39,8 kbyte	93,0 kbyte	[filförteckning]
armhf	39,1 kbyte	73,0 kbyte	[filförteckning]
i386	46,4 kbyte	113,0 kbyte	[filförteckning]
mips64el	47,0 kbyte	113,0 kbyte	[filförteckning]
mipsel	47,0 kbyte	112,0 kbyte	[filförteckning]
ppc64el	49,7 kbyte	146,0 kbyte	[filförteckning]
s390x	45,0 kbyte	118,0 kbyte	[filförteckning]