Paket: spaln (2.4.1+dfsg-3)

[ Källkod: spaln  ]

splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

Andra paket besläktade med spaln

• dep: libc6 (>= 2.29)

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• dep: libgcc-s1 (>= 3.3.1)

  GCC stödbibliotek

• dep: libstdc++6 (>= 5)

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• dep: spaln-data

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• dep: zlib1g (>= 1:1.2.0.2)

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Arkitektur	Paketstorlek	Installerad storlek	Filer
mipsel	323,5 kbyte	895,0 kbyte	[filförteckning]