Paket: ragout (2.3-2 och andra)

[ Källkod: ragout  ]

Reference-Assisted Genome Ordering UTility

Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds).

The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome.

Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited.

Andra paket besläktade med ragout

• dep: libc6 (>= 2.4)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  GCC stödbibliotek

• dep: libstdc++6 (>= 9)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-networkx (>= 2.2)

  tool to create, manipulate and study complex networks (Python3)

• rec: sibelia

  comparative genomics tool

Hämta ragout

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
mipsel	2.3-2+b1	2.079,0 kbyte	9.718,0 kbyte	[filförteckning]