Paket: bio-rainbow (2.0.4+dfsg-2)
Länkar för bio-rainbow
Debianresurser:
Hämta källkodspaketet bio-rainbow:
- [bio-rainbow_2.0.4+dfsg-2.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-2.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [sourceforge.net]
Liknande paket:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
Andra paket besläktade med bio-rainbow
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
Hämta bio-rainbow
Arkitektur | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|
mipsel | 59,9 kbyte | 202,0 kbyte | [filförteckning] |