Paket: gmap (2021-02-22+ds-1)

Länkar för gmap

Debianresurser:

Hämta källkodspaketet gmap:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Shaun Jackman (QA-sida)
Andreas Tille (QA-sida)
Alexandre Mestiashvili (QA-sida)
Nilesh Patra (QA-sida)

Externa resurser:

Hemsida [research-pub.gene.com]

Liknande paket:

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Märken: Field: Biologi, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

Andra paket besläktade med gmap

beror

rekommenderar

föreslår

enhances

dep: libbz2-1.0

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.29)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: zlib1g (>= 1:1.2.6)

Kompressionsbibliotek - körtidspaket

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Arkitektur	Paketstorlek	Installerad storlek	Filer
i386	5.907,0 kbyte	43.773,0 kbyte	[filförteckning]