Paket: fastqtl (2.184+dfsg-7 och andra)

[ Källkod: fastqtl  ]

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

Märken: Field: Biologi, Bioinformatics, User Interface: interface::commandline, role::program, Purpose: Analysing

Andra paket besläktade med fastqtl

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  eller libblas.so.3

  virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• dep: r-mathlib

  GNU R standalone mathematics library

• sug: fastqtl-doc

  QTL mapper in cis for molecular phenotypes - documentation

Hämta fastqtl

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
i386	2.184+dfsg-7+b4	200,3 kbyte	676,0 kbyte	[filförteckning]