Paket: golang-github-gogetdata-ggd-utils-dev (0.0.7+ds-3)

[ Källkod: ggd-utils  ]

library for use in ggd

Takes a genome file and (currently) a .vcf.gz or a .bed.gz and checks that:

    * a .tbi is present
    * the VCF has ""##fileformat=VCF" as the first
    line
    * the VCF has a #CHROM header
    * the chromosome are in the order specified by
    the genome file (and present)
    * the positions are sorted
    * the positions are <= the chromosome lengths
    defined in the genome file.

As a result, any new genome going into GGD will have a .genome file that will dictate the sort order and presence or absence of the 'chr' prefix for chromosomes

This is the library package for ggd-utils

Hämta golang-github-gogetdata-ggd-utils-dev

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
all	5,4 kbyte	27,0 kbyte	[filförteckning]