Paket: beagle (5.1-200518+dfsg-1)

[ Källkod: beagle  ]

Genotype calling, genotype phasing and imputation of ungenotyped markers

Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, Role: Program, Purpose: Analysing

Andra paket besläktade med beagle

• dep: default-jre

  Standard Java or Java compatible Runtime

  eller java11-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• sug: beagle-doc

  Documentation for Beagle

Hämta beagle

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	298,5 kbyte	622,0 kbyte	[filförteckning]