Paket: arden (1.0-5)

[ Källkod: arden  ]

specificity control for read alignments using an artificial reference

ARDEN (Artificial Reference Driven Estimation of false positives in NGS data) is a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation.

Andra paket besläktade med arden

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-htseq

  Python3 high-throughput genome sequencing read analysis utilities

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-scipy

  scientific tools for Python 3

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