Paket: python3-unifrac (1.2-3 och andra)

[ Källkod: unifrac  ]

high-performance phylogenetic diversity calculations

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains the Python3 module.

Andra paket besläktade med python3-unifrac

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.17)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libssu0 (>= 1.2)

  high-performance phylogenetic diversity calculations (lib)

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-biom-format

  Biological Observation Matrix (BIOM) format (Python 3)

• dep: python3-h5py (>= 3.3.0)

  general-purpose Python interface to hdf5

• dep: python3-iow

  balanced parentheses tree structure

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-skbio (>= 0.5.8-3~)

  Python3 data structures, algorithms, educational resources for bioinformatic

Hämta python3-unifrac

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
ppc64el	1.2-3+b1	120,5 kbyte	670,0 kbyte	[filförteckning]