[ Källkod: ea-utils ]
Paket: ea-utils (1.1.2+dfsg-9 och andra)
Länkar för ea-utils
Debianresurser:
Hämta källkodspaketet ea-utils:
Ansvariga:
Externa resurser:
- Hemsida [expressionanalysis.github.io]
Liknande paket:
command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.
Primarily written to support an Illumina based pipeline - but should work with any FASTQs.
Main Tools are:
* fastq-mcfScans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.
* fastq-multxDemultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.
* fastq-joinSimilar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.
* varcallTakes a pileup and calculates variants in a more easily parameterized manner than some other tools.
Andra paket besläktade med ea-utils
|
|
|
|
-
- dep: libc6 (>= 2.34)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
-
- dep: libgcc-s1 (>= 3.0)
- GCC stödbibliotek
-
- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
-
- dep: libstdc++6 (>= 11)
- GNU standardbibliotek v3 för C++
-
- dep: r-base-core
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-formula
- GNU R package for extended model formulas
-
- dep: r-cran-getopt
- GNU R package providing command-line parsing functionality
-
- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- dep: r-cran-hmisc
- GNU R miscellaneous functions by Frank Harrell
-
- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
-
- dep: r-cran-survival
- GNU R package for survival analysis
-
- dep: zlib1g (>= 1:1.2.3.3)
- Kompressionsbibliotek - körtidspaket
-
- rec: med-config (>= 2.1)
- Debian Med general config package
Hämta ea-utils
Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
---|---|---|---|---|
mips64el | 1.1.2+dfsg-9+b2 | 229,8 kbyte | 1.094,0 kbyte | [filförteckning] |