Paket: artemis (18.2.0+dfsg-3)

[ Källkod: artemis  ]

genome browser and annotation tool

Artemis is a genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.

This package includes the Artemis genome browser, the Artemis Comparison Tool (ACT), and the DNAplotter and BamView utilities.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::java, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Purpose: Analysing, use::comparing, use::editing, Works with: Biological Sequence, X Window System: Application

Andra paket besläktade med artemis

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: jemboss

  graphical user interface to EMBOSS

• dep: libbatik-java (>= 1.16)

  xml.apache.org SVG Library

• dep: libbiojava-java (>= 1:1.9.5+dfsg)

  Java API to biological data and applications (default version)

• dep: libcglib-java (>= 3.3.0)

  Code generation library for Java

• dep: libcommons-lang3-java

  Apache Commons Lang utility classes

• dep: libcommons-logging-java (>= 1.2)

  common wrapper interface for several logging APIs

• dep: libcommons-net-java

  Apache Commons Net - Java client API for basic Internet protocols

• dep: libhtsjdk-java

  Java API for high-throughput sequencing data (HTS) formats

• dep: libibatis-java (>= 2.3.4.726)

  iBATIS Data Mapper framework

• dep: libj2ssh-java (>= 0.2.9)

  Java library for the SSH protocol

• dep: liblog4j1.2-java

  Logging library for java

• dep: libpicard-java

  Java library to manipulate SAM and BAM files

• dep: libpostgresql-jdbc-java

  Java database (JDBC) driver for PostgreSQL

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	3.710,6 kbyte	20.783,0 kbyte	[filförteckning]