Paket: cwltool (3.1.20230209161050-1)

[ Källkod: cwltool  ]

Common Workflow Language reference implementation

This is the reference implementation of the Common Workflow Language standards.

The CWL open standards are for describing analysis workflows and tools in a way that makes them portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. CWL is designed to meet the needs of data-intensive science, such as Bioinformatics, Medical Imaging, Astronomy, Physics, and Chemistry.

The CWL reference implementation (cwltool) is intended to be feature complete and to provide comprehensive validation of CWL files as well as provide other tools related to working with CWL descriptions.

Märken: Systemadministration: Automation and Scheduling, Virtualisering, Field: field::astronomy, field::biology, field::biology:bioinformatics, field::biology:molecular, Structural Biology, field::medicine, field::physics, Implemented in: Python, User Interface: interface::commandline, role::program, Vetenskap: Calculation, Scope: Utility, Class of system: system::cloud, system::laptop, Server, Virtual, Purpose: use::analysing, use::filtering, Supports Format: Behöver ett märke till, Works with: works-with::semantic-data, works-with::software:package

Andra paket besläktade med cwltool

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-arcp

  (Archive and Package) URI parser and generator

• dep: python3-argcomplete

  bash tab completion for argparse (for Python 3)

• dep: python3-coloredlogs

  colored terminal output for Python 3's logging module

• dep: python3-cwl-utils

  Python Utilities and Autogenerated Classes for CWL v1.0 - v1.2

• dep: python3-distutils

  distutils package for Python 3.x

• dep: python3-mypy-extensions

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• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-prov

  W3C Provenance Data Model (Python 3)

• dep: python3-psutil

  module providing convenience functions for managing processes (Python3)

• dep: python3-pydot

  Python interface to Graphviz's dot (Python 3)

• dep: python3-pyparsing

  alternative to creating and executing simple grammars - Python 3.x

• dep: python3-rdflib

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• dep: python3-requests

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• dep: python3-ruamel.yaml

  roundtrip YAML parser/emitter (Python 3 module)

• dep: python3-schema-salad (>= 8.4)

  Schema Annotations for Linked Avro Data (SALAD)

• dep: python3-shellescape

  escapes characters to safely assemble command lines

• dep: python3-typing-extensions

  Backported and Experimental Type Hints for Python

• rec: nodejs

  evented I/O for V8 javascript - runtime executable

• sug: podman

  engine to run OCI-based containers in Pods

  eller docker.io

  Linux container runtime

  eller singularity-container

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