Paket: skewer (0.2.2-6 och andra)

[ Källkod: skewer  ]

post-processing of high-throughput DNA sequence reads

skewer implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences.

Features

 * Detection and removal of adapter sequences
 * Insertion and deletion allowed in pattern matching
 * Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
 * Demultiplexing of barcoded sequencing runs
 * Multi-threading support
 * Trimming based on phred quality scores
 * IUPAC characters for barcodes and adapters
 * Compressed input and output support

Andra paket besläktade med skewer

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC stödbibliotek

• dep: libstdc++6 (>= 11)

  GNU standardbibliotek v3 för C++

Hämta skewer

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
armel	0.2.2-6+b1	75,2 kbyte	235,0 kbyte	[filförteckning]