Paket: bcbio (1.2.9-2) [contrib]

[ Källkod: bcbio  ]

toolkit for analysing high-throughput sequencing data

This package installs the command line tools of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.

A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.

This package builds and having it in Debian unstable helps the Debian developers to synchronize their efforts. But unless a series of external dependencies are not installed manually, the functionality of bcbio in Debian is only a shadow of itself. Please use the official distribution of bcbio for the time being, which means "use conda". The TODO file in the Debian directory should give an overview on progress for Debian packaging.

Andra paket besläktade med bcbio

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-bcbio

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• rec: bcftools

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• rec: bwa

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• rec: cnvkit

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• rec: cufflinks

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• rec: fastqc

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• rec: freebayes

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• rec: grabix

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• rec: hisat2

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• rec: libvcflib-tools

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• rec: macs

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• rec: pythonpy

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• rec: rna-star

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• rec: salmon

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• rec: sambamba

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• rec: samblaster

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• rec: samtools

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• rec: stringtie

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• rec: subread

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• rec: tabix

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• rec: umis

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• rec: varscan

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• rec: wget

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• rec: wham-align

  Wisconsin's High-Throughput Alignment Method

• sug: bcbio-doc

  Paketet inte tillgängligt

• sug: cwltool

  Common Workflow Language reference implementation

• sug: kallisto

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• sug: libglu1-mesa

  Mesa OpenGL utility library (GLU)

• sug: qualimap

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• sug: r-bioc-summarizedexperiment

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• sug: r-cran-tidyverse

  Easily Install and Load the 'Tidyverse'

• sug: r-other-wasabi

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• sug: toil

  cross-platform workflow engine

• sug: tophat-recondition

  post-processor for TopHat unmapped reads

• sug: tophat2

  Paketet inte tillgängligt

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	75,3 kbyte	285,0 kbyte	[filförteckning]