Balík: toppic (1.5.3+dfsg1-1 a iné)

[ Zdroj: toppic  ]

Top-down proteoform identification and characterization (programs)

The TopPIC Suite consists of four software tools for the interpretation of top-down mass spectrometry data: TopFD, TopPIC, TopMG, and TopDiff.

 -TopFD (Top-down mass spectral Feature Detection) is a software tool
   for top-down spectral deconvolution and a successor to MS-Deconv.  It
   groups top-down spectral peaks into isotopomer envelopes and converts
   isotopomer envelopes to monoisotopic neutral masses. In addition, it
   extracts proteoform features from LC-MS or CE-MS data.

 -TopPIC (Top-down mass spectrometry based Proteoform Identification
   and Characterization) identifies and characterizes proteoforms at the
   proteome level by searching top-down tandem mass spectra against a
   protein sequence database. TopPIC is a successor to MS-Align+. It
   efficiently identifies proteoforms with unexpected alterations, such
   as mutations and post-translational modifications (PTMs), accurately
   estimates the statistical significance of identifications, and
   characterizes reported proteoforms with unknown mass shifts. It uses
   several techniques, such as indexes, spectral alignment, generation
   function methods, and the modification identification score (MIScore),
   to increase the speed, sensitivity, and accuracy.

 -TopMG (Top-down mass spectrometry based proteoform identification
   using Mass Graphs) is a software tool for identifying ultra-modified
   proteoforms by searching top-down tandem mass spectra against a
   protein sequence database.  It is capable of identifying proteoforms
   with multiple variable PTMs and unexpected alterations, such as
   histone proteoforms and phosphorylated ones.  It uses mass graphs,
   which efficiently represent candidate proteoforms with multiple
   variable PTMs, to increase the speed and sensitivity in proteoform
   identification. In addition, approximate spectrum-based filtering
   methods are employed for protein sequence filtering, and a Markov
   chain Monte Carlo method (TopMCMC) is used for estimating the
   statistical significance of identifications.

 -TopDiff (Top-down mass spectrometry-based identification of
   Differentially expressed proteoforms) compares the abundances of
   proteoforms and finds differentially expressed proteoforms by using
   identifications of top-down mass spectrometry data of several protein
   samples.

Značky: Sada nástrojov používateľského rozhrania: Qt

Ostatné balíky súvisiace s balíkom toppic

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  operácie so súborovým systémom (portabilné cesty, prechádzanie adresárov atď.) v C++

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  knižnica volieb programu pre C++

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  knižnica na serializáciu pre C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  portabilný multi-threading pre C++

• dep: libc6 (>= 2.34) [nie arm64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [amd64, ppc64el, s390x]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libpwizlite3t64 (>= 3.0.5) [nie arm64]

  Library to load mzML/mzXML files (runtime files)

  dep: libpwizlite3t64 (>= 3.0.8) [arm64]

• dep: libqt5core5t64 (>= 5.15.1)

  základný modul Qt 5

• dep: libqt5gui5t64 (>= 5.0.2)

  modul grafického používateľského rozhrania Qt 5

  alebo libqt5gui5-gles (>= 5.0.2)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5widgets5t64 (>= 5.2.0~alpha1)

  modul ovládacích prvkov Qt 5

• dep: libstdc++6 (>= 13.1) [nie arm64]

  štandardná knižnica C++ GNU v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: libxerces-c3.2t64

  knižnica parsera XML s overovaním v jazyku C++

• dep: toppic-common (= 1.5.3+dfsg1-1)

  Top-down proteoform identification and characterization (common data)

Stiahnuť toppic

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1.5.3+dfsg1-1+b2	4,628.2 kB	33,073.0 kB	[zoznam súborov]
arm64	1.5.3+dfsg1-1+b3	4,257.4 kB	31,885.0 kB	[zoznam súborov]
armel	1.5.3+dfsg1-1+b2	3,822.2 kB	29,888.0 kB	[zoznam súborov]
armhf	1.5.3+dfsg1-1+b2	2,876.6 kB	22,528.0 kB	[zoznam súborov]
i386	1.5.3+dfsg1-1+b2	4,854.7 kB	33,480.0 kB	[zoznam súborov]
mips64el	1.5.3+dfsg1-1+b2	3,679.1 kB	40,870.0 kB	[zoznam súborov]
ppc64el	1.5.3+dfsg1-1+b2	4,261.7 kB	39,053.0 kB	[zoznam súborov]
riscv64	1.5.3+dfsg1-1+b3	4,220.1 kB	25,933.0 kB	[zoznam súborov]
s390x	1.5.3+dfsg1-1+b2	4,260.4 kB	33,497.0 kB	[zoznam súborov]