Balík: python3-presto (0.7.2-1)

[ Zdroj: presto  ]

toolkit for processing B and T cell sequences (Python3 module)

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

This package provides the presto Python3 module.

Ostatné balíky súvisiace s balíkom python3-presto

• dep: cd-hit

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• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3

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• dep: python3-biopython

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• dep: python3-numpy

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• dep: python3-packaging

  základné nástroje balíkov jazyka Python 3

• dep: python3-pandas

  údajové štruktúry „relačných“ dát alebo dát „s označením“

• dep: python3-scipy

  vedecké nástroje pre Python 3

Stiahnuť python3-presto

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
s390x	77.7 kB	513.0 kB	[zoznam súborov]