Balík: r-bioc-deseq2 (1.44.0+dfsg-1)

[ Zdroj: r-bioc-deseq2  ]

R package for RNA-Seq Differential Expression Analysis

Differential gene expression analysis based on the negative binomial distribution. Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential expression based on a model using the negative binomial distribution.

Ostatné balíky súvisiace s balíkom r-bioc-deseq2

• dep: libblas3

  referenčné implementácie základnej lineárnej algebry - zdieľaná knižnica

  alebo libblas.so.3

  virtuálny balík poskytovaný balíkom libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.27)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: liblapack3

  knižnica rutín lineárnej algebry, verzia 3 - zdieľaná knižnica

  alebo liblapack.so.3

  virtuálny balík poskytovaný balíkom liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 14)

  štandardná knižnica C++ GNU v3

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.19

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-matrixgenerics (>= 1.16.0)

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• dep: r-cran-ggplot2 (>= 3.4.0)

  implementácia Gramatiky grafiky

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcpp (>= 0.11.0)

  balík GNU R na hladkú integráciu R a C++

• dep: r-cran-rcpparmadillo

  GNU R package for Armadillo C++ linear algebra library

• sug: r-bioc-glmgampoi (>= 1.16.0)

  GNU R fit a Gamma-Poisson generalized linear model

• sug: r-bioc-tximeta (>= 1.22.1)

  Transcript Quantification Import with Automatic Metadata

• sug: r-bioc-tximport (>= 1.32.0)

  transcript-level estimates for biological sequencing

• sug: r-bioc-tximportdata (>= 1.32.0)

  GNU R various transcript abundance quantifiers

• sug: r-cran-biocmanager

  access the Bioconductor project package repository

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-pbapply

  GNU R package providing progress bars for vectorized R functions

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rcolorbrewer

  balík GNU R poskytujúci vhodné palety farieb

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
riscv64	1,251.0 kB	1,687.0 kB	[zoznam súborov]