[ Zdroj: pigx-rnaseq ]
Balík: pigx-rnaseq (0.1.1-1)
Odkazy pre pigx-rnaseq
Zdroje Debian:
Stiahnuť zdrojový balík pigx-rnaseq:
Správcovia:
Externé zdroje:
- Domovská stránka [github.com]
Podobné balíky:
pipeline for checkpointed and distributed RNA-seq analyses
This package provides a automated workflow for the automated analysis of RNA-seq experiments. A series of well-accecpted tools are connected in Python scripts and controlled via snakemake. This supports the parallel execution of these workflows and provides checkpointing, such that interrupted workflows can take up their work again.
Ostatné balíky súvisiace s balíkom pigx-rnaseq
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- dep: fastp
- Ultra-fast all-in-one FASTQ preprocessor
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- dep: fastqc
- quality control for high throughput sequence data
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- dep: libjs-jquery-datatables
- zásuvný modul jQuery na tvorbu pekných tabuliek z rôznych zdrojov dát
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- dep: libjs-jquery-tablesorter
- jQuery flexible client-side table sorting plugin
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- dep: megadepth
- computes coverage from BigWig and BAM sequencing files
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- dep: multiqc
- output integration for RNA sequencing across tools and samples
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-deeptools
- platform for exploring biological deep-sequencing data
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- dep: python3-htseq
- Python3 high-throughput genome sequencing read analysis utilities
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- dep: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- dep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-summarizedexperiment
- BioConductor assay container
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- dep: r-bioc-tximport
- transcript-level estimates for biological sequencing
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- dep: r-cran-corrplot
- Visualization of a Correlation Matrix
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- dep: r-cran-crosstalk
- GNU R inter-widget interactivity for HTML widgets
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- dep: r-cran-data.table
- GNU R - rozšírenie Data.frame
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- dep: r-cran-dt
- GNU R wrapper of the JavaScript library 'DataTables'
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- dep: r-cran-ggplot2
- implementácia Gramatiky grafiky
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- dep: r-cran-ggpubr
- GNU R ggplot2 based publication ready plots
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- dep: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
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- dep: r-cran-gprofiler2
- Interface to the 'g:Profiler' Toolset
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- dep: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- dep: r-cran-plotly
- create interactive web graphics via 'plotly.js' in GNU R
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- dep: r-cran-reshape2
- flexibilná zmena tvaru dát - reboot balíka reshape
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- dep: r-cran-rjson
- GNU R package for converting between R and JSON objects
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- dep: r-cran-scales
- škálovacie funkcie na vizualizáciu
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- dep: salmon
- wicked-fast transcript quantification from RNA-seq data
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: snakemake
- pythonic workflow management system
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- dep: trim-galore
- automate quality and adapter trimming for DNA sequencing
Stiahnuť pigx-rnaseq
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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all | 60.3 kB | 176.0 kB | [zoznam súborov] |