Balík: bitseq (0.7.5+dfsg-6)

[ Zdroj: bitseq  ]

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

Ostatné balíky súvisiace s balíkom bitseq

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: libgomp1 (>= 6)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: zlib1g (>= 1:1.2.3.3)

  komprimačná knižnica - dynamická verzia

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
i386	362.5 kB	2,022.0 kB	[zoznam súborov]