Balík: r-cran-alakazam (1.0.2-1) [debports]

[ Zdroj:  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Ostatné balíky súvisiace s balíkom r-cran-alakazam

• dep: libc6 (>= 2.4)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  podporná knižnica GCC

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-base-core (>= 4.0.2-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-cran-ape

  GNU R package for Analyses of Phylogenetics and Evolution

• dep: r-cran-dplyr (>= 0.8.3)

  GNU R grammar of data manipulation

• dep: r-cran-ggplot2 (>= 3.2.0)

  implementácia Gramatiky grafiky

• dep: r-cran-igraph (>= 1.0.0)

  GNU R network analysis and visualization

• dep: r-cran-lazyeval

  GNU R lazy (non-standard) evaluation

• dep: r-cran-matrix

  balík tried GNU R pre husté a riedke matice

• dep: r-cran-progress

  GNU R terminal progress bars

• dep: r-cran-rcpp (>= 0.12.12)

  balík GNU R na hladkú integráciu R a C++

• dep: r-cran-readr

  GNU R package to read rectangular text data

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  škálovacie funkcie na vizualizáciu

• dep: r-cran-seqinr

  GNU R biological sequences retrieval and analysis

• dep: r-cran-stringi

  GNU R - spracovanie reťazcov znakov

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr (>= 1.0.0)

  GNU R package to easily tidy data

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
sparc64 (neoficiálny port)	1,855.4 kB	2,252.0 kB	[zoznam súborov]