Balík: r-bioc-tfbstools (1.42.0+dfsg-1)

[ Zdroj: r-bioc-tfbstools  ]

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Ostatné balíky súvisiace s balíkom r-bioc-tfbstools

• dep: libc6 (>= 2.4)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.19

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-bioc-biobase (>= 2.28)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.14.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.2.21)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.36.4)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.36.3)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-cner (>= 1.4.0)

  CNE Detection and Visualization

• dep: r-bioc-dirichletmultinomial (>= 1.10.0)

  Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

• dep: r-bioc-genomeinfodb (>= 1.6.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.20.6)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.2.7)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-pwalign

  Perform pairwise sequence alignments

• dep: r-bioc-rtracklayer (>= 1.28.10)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-seqlogo (>= 1.34.0)

  GNU R sequence logos for DNA sequence alignments

• dep: r-bioc-xvector (>= 0.8.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-catools (>= 1.17.1)

  GNU R package providing various utility functions

• dep: r-cran-dbi (>= 0.6)

  balík GNU R poskytujúci všeobecné databázové rozhranie

• dep: r-cran-gtools (>= 3.5.0)

  balík GNU R s programovacími nástrojmi pre R, ktoré napísali Greg Warnes et al

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: r-cran-tfmpvalue (>= 0.0.5)

  GNU R P-Value Computation for Position Weight Matrices

• dep: r-cran-xml (>= 3.98-1.3)

  GNU R package for XML parsing and generation

• sug: r-bioc-biocstyle (>= 1.7.7)

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr (>= 1.11)

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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