Balík: nanook (1.33+dfsg-5)

[ Zdroj: nanook  ]

pre- and post-alignment analysis of nanopore sequencing data

NanoOK is a flexible, multi-reference software for pre- and post- alignment analysis of nanopore sequencing data, quality and error profiles.

NanoOK (pronounced na-nook) is a tool for extraction, alignment and analysis of Nanopore reads. NanoOK will extract reads as FASTA or FASTQ files, align them (with a choice of alignment tools), then generate a comprehensive multi-page PDF report containing yield, accuracy and quality analysis. Along the way, it generates plain text files which can be used for further analysis, as well as graphs suitable for inclusion in presentations and papers.

Ostatné balíky súvisiace s balíkom nanook

• dep: default-jre-headless

  Standard Java or Java compatible Runtime (headless)

• dep: hdf5-tools

  HDF5 - Runtime tools

• dep: last-align

  genome-scale comparison of biological sequences

• dep: libcommons-io-java

  bežné triedy týkajúce sa V/V

• dep: r-cran-ggplot2

  implementácia Gramatiky grafiky

• dep: r-cran-gridextra

  GNU R - balík s rozšíreniami balíka grid

• dep: r-cran-reshape

  Flexibly reshape data

• dep: r-cran-scales

  škálovacie funkcie na vizualizáciu

• dep: texlive-latex-base

  TeX Live: LaTeX fundamental packages

• rec: blasr

  mapping single-molecule sequencing reads

• rec: bwa

  Burrows-Wheeler Aligner

• sug: default-jre

  Standard Java or Java compatible Runtime

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