Balík: miniasm (0.3+dfsg-4) [debports]

[ Zdroj:  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Ostatné balíky súvisiace s balíkom miniasm

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

Stiahnuť miniasm

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
ppc64 (neoficiálny port)	32.3 kB	147.0 kB	[zoznam súborov]