Balík: libgenomicsdb1 (1.5.4-4) [debports]

[ Zdroj:  ]

sparse array storage library for genomics (shared libraries)

GenomicsDB is built on top of a htslib fork and an internal array storage system for importing, querying and transforming variant data. Variant data is sparse by nature (sparse relative to the whole genome) and using sparse array data stores is a perfect fit for storing such data.

The GenomicsDB stores variant data in a 2D array where:

 - Each column corresponds to a genomic position (chromosome + position);
 - Each row corresponds to a sample in a VCF (or CallSet in the GA4GH
   terminology);
 - Each cell contains data for a given sample/CallSet at a given position;
   data is stored in the form of cell attributes;
 - Cells are stored in column major order - this makes accessing cells with
   the same column index (i.e. data for a given genomic position over all
   samples) fast.
 - Variant interval/gVCF interval data is stored in a cell at the start of the
   interval. The END is stored as a cell attribute. For variant intervals
   (such as deletions and gVCF REF blocks), an additional cell is stored at
   the END value of the variant interval. When queried for a given genomic
   position, the query library performs an efficient sweep to determine all
   intervals that intersect with the queried position.

This package contains the shared library.

Ostatné balíky súvisiace s balíkom libgenomicsdb1

• dep: libbz2-1.0

  kvalitná knižnica na komprimáciu súborov s triedením blokov - dynamická knižnica

• dep: libc6 (>= 2.38)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libcurl4t64 (>= 7.18.0)

  jednoducho použiteľná klientská knižnica na prenos URL (OpenSSL)

• dep: libfmt10 (>= 10.1.1+ds1)

  fast type-safe C++ formatting library -- library

• dep: libgcc-s2 (>= 4.2.1)

  podporná knižnica GCC

• dep: libgomp1 (>= 4.9)

  podporná knižnica GCC OpenMP (GOMP)

• dep: liblzma5 (>= 5.1.1alpha+20120614)

  komprimačná knižnica formátu XZ

• dep: libmuparserx4.0.12 (>= 4.0.12)

  mathematical expression parser library

• dep: libprotobuf32t64 (>= 3.21.12)

  knižnica Protocol Buffers pre C++

• dep: libssl3t64 (>= 3.0.0)

  sada nástrojov SSL (Secure Sockets Layer) - zdieľné knižnice

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: libuuid1 (>= 2.16)

  knižnica všeobecne jedinečných identifikátorov

• dep: mpi-default-bin

  štandardné dynamické programy MPI - metabalík

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

Stiahnuť libgenomicsdb1

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
m68k (neoficiálny port)	1,442.5 kB	5,399.0 kB	[zoznam súborov]