Balík: gubbins (2.3.5-1) [debports]

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phylogenetic analysis of genome sequences

Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences.

Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.

Ostatné balíky súvisiace s balíkom gubbins

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-nose

  objavovanie testov a spúšťanie unit testov Pythonu 3

• dep: python3-reportlab

  knižnica ReportLab na tvorbu dokumentov PDF pomocou Pythonu

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
m68k (neoficiálny port)	46.0 kB	174.0 kB	[zoznam súborov]