Zoznam súborov balíka libhtsjdk-java-doc v sid architektúry all

/usr/share/doc-base/libhtsjdk-java-doc.libhtsjdk-java-doc
/usr/share/doc/libhtsjdk-java-doc/changelog.Debian.gz
/usr/share/doc/libhtsjdk-java-doc/copyright
/usr/share/doc/libhtsjdk-java/api/allclasses-index.html
/usr/share/doc/libhtsjdk-java/api/allpackages-index.html
/usr/share/doc/libhtsjdk-java/api/constant-values.html
/usr/share/doc/libhtsjdk-java/api/deprecated-list.html
/usr/share/doc/libhtsjdk-java/api/element-list
/usr/share/doc/libhtsjdk-java/api/help-doc.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/annotations/BetaAPI.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/annotations/InternalAPI.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/annotations/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/annotations/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/hapref/fasta/FASTACodecV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/hapref/fasta/FASTADecoderV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/hapref/fasta/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/hapref/fasta/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/ReadsCodecUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/BAMCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/BAMDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/BAMDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/BAMEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/BAMEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMCodecV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMDecoderV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/bamV1_0/BAMEncoderV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/bamV1_0/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/bamV1_0/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/bam/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/CRAMCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/CRAMDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/CRAMDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/CRAMEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/CRAMEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV2_1/CRAMCodecV2_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV2_1/CRAMDecoderV2_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV2_1/CRAMEncoderV2_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV2_1/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV2_1/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV3_0/CRAMCodecV3_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV3_0/CRAMDecoderV3_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV3_0/CRAMEncoderV3_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV3_0/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/cramV3_0/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/cram/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/HtsgetBAMCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/HtsgetBAMDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/HtsgetBAMCodecV1_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/HtsgetBAMDecoderV1_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/htsgetBAMV1_2/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/htsget/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/SAMCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/SAMDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/SAMEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/samV1_0/SAMCodecV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/samV1_0/SAMDecoderV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/samV1_0/SAMEncoderV1_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/samV1_0/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/reads/sam/samV1_0/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/VCFCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/VCFDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/VCFEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/VariantsCodecUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_2/VCFCodecV3_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_2/VCFDecoderV3_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_2/VCFEncoderV3_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_2/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_2/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_3/VCFCodecV3_3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_3/VCFDecoderV3_3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_3/VCFEncoderV3_3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_3/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv3_3/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_0/VCFCodecV4_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_0/VCFDecoderV4_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_0/VCFEncoderV4_0.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_0/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_0/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_1/VCFCodecV4_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_1/VCFDecoderV4_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_1/VCFEncoderV4_1.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_1/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_1/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_2/VCFCodecV4_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_2/VCFDecoderV4_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_2/VCFEncoderV4_2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_2/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_2/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_3/VCFCodecV4_3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_3/VCFDecoderV4_3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_3/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/codecs/variants/vcf/vcfv4_3/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/HtsjdkException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/HtsjdkIOException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/HtsjdkPluginException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/HtsjdkUnsupportedOperationException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/exception/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/IOPathUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/Bundle.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/BundleBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/BundleJSON.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/BundleResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/BundleResourceBase.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/BundleResourceType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/IOPathResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/InputStreamResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/OutputStreamResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/SeekableStreamResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/SignatureStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/bundle/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/io/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsContentType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/HtsVersion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/IOUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/Upgradeable.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HapRefDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/HaploidReferenceFormats.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/hapref/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/HtsInterval.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/HtsIntervalUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/HtsQuery.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/HtsQueryInterval.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/HtsQueryRule.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/interval/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsBundle.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsFormats.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/ReadsQuery.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/reads/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/HaploidReferenceResolver.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/HtsCodecRegistry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/HtsCodecResolver.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/HtsDefaultRegistry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/ReadsResolver.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/VariantsResolver.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/registry/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsDecoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsEncoderOptions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/VariantsFormats.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/beta/plugin/variants/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/AsyncWriterPool.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/HtsPath.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/IOPath.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/Writer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/io/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/AbstractBAMFileIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/AbstractSAMHeaderRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/AlignmentBlock.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileReader.BAMQueryFilteringIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileSpan.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMFileWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMIndexMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMIndexMetaData.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMQueryMultipleIntervalsIteratorFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMRecordCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMSBIIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMStartingAtIteratorFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BAMStreamWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BamFileIoUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BamIndexValidator.IndexValidationStringency.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BamIndexValidator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Bin.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinList.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinWithOffset.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinaryTagCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexBuilder.FeatureToBeIndexed.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexContent.BinList.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BinningIndexContent.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/BrowseableBAMIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMBAIIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMCRAIIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMContainerStreamWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMFileReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMFileWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CRAMIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CSIIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Chunk.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Cigar.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CigarElement.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CigarOperator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CoordinateSortedPairInfoMap.Codec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CoordinateSortedPairInfoMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CustomReaderFactory.ICustomReaderFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/CustomReaderFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DefaultSAMRecordFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/Defaults.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DiskBasedBAMFileIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIteratorFactory.Strategy.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DownsamplingIteratorFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateScoringStrategy.ScoringStrategy.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateScoringStrategy.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateSet.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/DuplicateSetIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/FileTruncatedException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/GenomicIndexUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/HtsgetBAMFileReader.BAMQueryMultipleIntervalsIteratorFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/HtsgetBAMFileReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/IndexMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/LinearIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/MergingSamRecordIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/NotPrimarySkippingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/QueryInterval.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/ReservedTagConstants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMBinaryTagAndUnsignedArrayValue.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMBinaryTagAndValue.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileHeader.GroupOrder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileHeader.PgIdGenerator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileHeader.SortOrder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileSource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileSpan.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileWriterFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFileWriterImpl.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFlag.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMFormatException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMHeaderRecordComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMLineParser.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMProgramRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMReadGroupRecord.PlatformValue.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMReadGroupRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecord.SAMTagAndValue.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordCoordinateComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordDuplicateComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordQueryHashComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordQueryNameComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMRecordSetBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceDictionary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceDictionaryCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSequenceRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMSortOrderChecker.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTag.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTagUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTestUtil.SanityCheckFailedException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTestUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTextHeaderCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMTextWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMValidationError.Severity.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMValidationError.Type.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SAMValidationError.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndex.Header.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndexMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SBIIndexWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SQTagUtil.SQBase.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SQTagUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAFileReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAIterator.RecordRangeInfo.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SRAIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFileHeaderMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFileValidator.ValidationMetrics.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFileValidator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFiles.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamFlagField.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamIndexes.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamInputResource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamPairUtil.PairOrientation.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamPairUtil.SetMateInfoIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamPairUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.AssertingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.Indexing.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.PrimitiveSamReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.PrimitiveSamReaderToSamReaderAdapter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.ReaderImplementation.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.Type.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReaderFactory.Option.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamReaderFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SamStreams.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SecondaryAlignmentSkippingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/SecondaryOrSupplementarySkippingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TagValueAndUnsignedArrayFlag.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TextCigarCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/TextTagCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/ValidationStringency.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/TimeChannel.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/TimeRandomAccessFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/apps/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/BAIEntry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIEntry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAIIndexMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/CRAMException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CRAMReferenceRegion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CompressionHeaderFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/ContainerFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramContainerHeaderIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramContainerIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramIO.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/CramSpanContainerIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/SliceFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/Utils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/build/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/CRAMVersion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/CramVersions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/MutableInt.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/common/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/BZIP2ExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/ExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/GZIPExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/LZMAExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/RANSExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/RAWExternalCompressor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/RANS.ORDER.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/RANS.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/compression/rans/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/ContentDigests.KNOWN_DIGESTS.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/ContentDigests.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/digest/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/ByteArrayLenEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/CRAMCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/CRAMEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/EncodingFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/BetaIntegerCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/BetaIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CanonicalHuffmanByteEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CanonicalHuffmanIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/CoreCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/GammaIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/SubexponentialIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombLongEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/GolombRiceIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/experimental/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanBitCode.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanCanoncialCodeGenerator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanParams.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/HuffmanParamsCalculator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/huffmanUtils/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/core/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ByteArrayStopEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteArrayCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteArrayEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalByteEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalIntegerEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/ExternalLongEncoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/external/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/CramRecordReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/DataSeriesReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/reader/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/BaseQualityScore.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Bases.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Deletion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/HardClip.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/InsertBase.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Insertion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Padding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/ReadBase.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/ReadFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/RefSkip.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Scores.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/SoftClip.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/Substitution.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/readfeatures/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/CramRecordWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/DataSeriesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/encoding/writer/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/BitInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/BitOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CRC32InputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CRC32OutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CountingInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CramInt.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/CramIntArray.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/DefaultBitInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/DefaultBitOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/ITF8.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/InputStreamUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/LTF8.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/io/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/CRAMLazyReferenceSource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/CRAMReferenceSource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/EnaRefService.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/GaveUpException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/ReferenceContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/ReferenceContextType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/ReferenceSource.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/ref/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/AlignmentContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/AlignmentSpan.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CRAMCompressionRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CRAMEncodingStrategy.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CRAMRecordReadFeatures.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CompressionHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CompressionHeaderEncodingMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CompressorCache.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/Container.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/ContainerHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/CramHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/DataSeries.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/DataSeriesType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/EncodingDescriptor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/EncodingID.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/ReadTag.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/Slice.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/SliceBlocks.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/SliceBlocksReadStreams.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/SliceBlocksWriteStreams.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/SubstitutionMatrix.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/Block.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/BlockCompressionMethod.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/BlockContentType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/block/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/cram/structure/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/ExampleSamUsage.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/PrintReadsExample.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/example/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/AsyncFastqWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/BasicFastqWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqConstants.FastqExtensions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqConstants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqReader.LineType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/FastqWriterFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/fastq/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AbstractJavascriptFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AggregateFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/AlignedFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/DuplicateReadFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FailsVendorReadQualityFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FilteringIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/FilteringSamIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/InsertSizeFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/IntervalFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/IntervalKeepPairFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/InvertFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/JavascriptSamRecordFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/MappingQualityFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/NotPrimaryAlignmentFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/OverclippedReadFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/ReadNameFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SamRecordFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SecondaryAlignmentFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SecondaryOrSupplementaryFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/SolexaNoiseFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/TagFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/WholeReadClippedFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/filter/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/LiftOver.PartialLiftover.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/LiftOver.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/liftover/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/Header.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/MetricBase.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/MetricsFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/StringHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/VersionHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/metrics/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/BlockCompressedIndexedFastaSequenceFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaReferenceWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaReferenceWriterBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/FastaSequenceIndexEntry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/IndexedFastaSequenceFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequence.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequenceFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequenceFileFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/ReferenceSequenceFileWalker.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/SamLocusAndReferenceIterator.SAMLocusAndReference.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/SamLocusAndReferenceIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/reference/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ByteArraySeekableStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ISeekableStreamFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/ReadableSeekableStreamByteChannel.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableBufferedStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFTPStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFTPStreamHelper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableFileStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableHTTPStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableMemoryStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekablePathStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/SeekableStreamFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/UserPasswordInput.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/seekablestream/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/ReferenceCache.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAAccession.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAAlignmentIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAIndexedSequenceFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRALazyRecord.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAUnalignmentIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/SRAUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/sra/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractAsyncWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractLocusInfo.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractLocusIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractProgressLogger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractRecordAndOffset.AlignmentType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AbstractRecordAndOffset.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AsciiWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AsyncBlockCompressedInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/AsyncBufferedIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BinaryCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedFilePointerUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedInputStream.DecompressedBlock.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedInputStream.FileTermination.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockCompressedStreamConstants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BlockGunzipper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/BufferedLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CigarUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CloseableIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CloserUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CodeUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.DefaultingMap.Factory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.DefaultingMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.MultiMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.Partitioner.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CollectionUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ComparableTuple.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CoordMath.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CoordSpanInputSteam.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/CustomGzipOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DateParser.InvalidDateException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DateParser.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DelegatingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/DiskBackedQueue.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgeReadIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgingRecordAndOffset.Type.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/EdgingRecordAndOffset.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FastLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FastqQualityFormat.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FileAppendStreamLRUCache.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FileExtensions.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/FormatUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/GZIIndex.GZIIndexer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/GZIIndex.IndexEntry.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/GZIIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Histogram.Bin.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Histogram.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/HttpUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IOUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Interval.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalCoordinateComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalList.IntervalMergerIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalList.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalListReferenceSequenceMask.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalListWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.FwdIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.Node.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.OverlapIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.RevIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.ValuesIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalTreeMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalUtil.IntervalCombiner.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IntervalUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Iso8601Date.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IterableAdapter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/IterableOnceIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Iterables.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Lazy.LazyInitializer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Lazy.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ListMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Locatable.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocationAware.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Locus.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocusComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/LocusImpl.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Log.LogLevel.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Log.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Md5CalculatingInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Md5CalculatingOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/MergingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Murmur3.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/OverlapDetector.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PeekIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PeekableIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/PositionalOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProcessExecutor.ExitStatusAndOutput.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProcessExecutor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProgressLogger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ProgressLoggerInterface.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/QualityEncodingDetector.FileContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/QualityEncodingDetector.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/QualityUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ReferenceSequenceMask.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RelativeIso8601Date.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ResourceLimitedMap.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ResourceLimitedMapFunctor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeEOFException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeIOException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/RuntimeScriptException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SAMRecordPrefetchingIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamConstants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamLocusIterator.LocusInfo.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamLocusIterator.RecordAndOffset.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamLocusIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamRecordIntervalIteratorFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamRecordTrackingBuffer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SamRecordWithOrdinal.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SequenceUtil.SequenceListsDifferException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SequenceUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SnappyLoader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SolexaQualityConverter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SortingCollection.Codec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SortingCollection.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/SortingLongCollection.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StopWatch.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StringLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/StringUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TempStreamFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TerminatorlessBlockCompressedOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TestUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/TrimmingUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/Tuple.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/WholeGenomeReferenceSequenceMask.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPClient.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPReply.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/FTPUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/ftp/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetClass.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetErrorResponse.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetFormat.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetMalformedResponseException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetPOSTRequest.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetRequest.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetRequestField.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetResponse.Block.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/HtsgetResponse.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/htsget/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/DeleteOnExitPathHook.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/nio/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/DeflaterFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/InflaterFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/samtools/util/zip/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureReader.ComponentMethods.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AbstractFeatureReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/AsciiFeatureCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/BinaryFeatureCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/CloseableTribbleIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/Feature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureCodecHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/FeatureReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/IntervalList/IntervalListCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/IntervalList/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/IntervalList/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/MutableFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/NameAwareCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/NamedFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/SimpleFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TabixFeatureReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/Tribble.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.CorruptedIndexFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.FeatureFileDoesntExist.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InternalCodecException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InvalidDecodeLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.InvalidHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.MalformedFeatureFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.TabixReaderFailure.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.UnableToCreateCorrectIndexType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.UnableToReadIndexFile.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/TribbleIndexedFeatureReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/Strand.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/annotation/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDCodec.StartOffset.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/BEDFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.Exon.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.Exon2.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/FullBEDFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/SimpleBEDFeature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/bed/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/CountRecords.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/ExampleBinaryCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/IndexToTable.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/IndicesAreEqual.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/ProfileIndexReading.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/example/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/CodecLineParsingException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/UnsortedFileException.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/exception/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3BaseData.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Codec.DecodeDepth.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Codec.Gff3Directive.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Codec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Constants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Feature.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3FeatureImpl.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/Gff3Writer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/SequenceRegion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/gff/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.BlockStats.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.IndexType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/AbstractIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/Block.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/ChrIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/DynamicIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/Index.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.IndexBalanceApproach.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.IndexType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/IndexFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/MutableIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/TribbleIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/Interval.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTreeIndex.ChrIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/IntervalTreeIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/interval/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndex.ChrIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/LinearIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/linear/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/AllRefsTabixIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/StreamBasedTabixIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixFormat.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixIndexCreator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/TabixIndexMerger.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/index/tabix/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/AsciiLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/AsciiLineReaderIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineIteratorImpl.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/LongLineBufferedReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/Positional.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/PositionalBufferedStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/SynchronousLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixIteratorLineReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.Iterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.TIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.TPair64.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/TabixReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/readers/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/FTPHelper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/HTTPHelper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/LittleEndianInputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/LittleEndianOutputStream.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/MathUtils.RunningStat.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/MathUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/ParsingUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/RemoteURLHelper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TIndex.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TIntv.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.TPair64.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/TabixUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/URLHelper.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/URLHelperFactory.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/HardyWeinbergCalculation.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/tribble/util/popgen/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/ClassFinder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/ValidationUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/utils/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.LazyData.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.SitesInfoForDecoding.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Codec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Decoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2GenotypeFieldDecoders.Decoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2GenotypeFieldDecoders.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2LazyGenotypesDecoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Type.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCF2Utils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/BCFVersion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/bcf2/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/PrintVariantsExample.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/example/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/BinomialCoefficientUtil.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/GeneralUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/SAMSequenceDictionaryExtractor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/VCFHeaderReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/utils/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/Allele.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/CommonInfo.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/FastGenotype.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/Genotype.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeJEXLContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeLikelihoods.GenotypeLikelihoodsAllelePair.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeLikelihoods.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypeType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/GenotypesContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/JexlMissingValueTreatment.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.LazyData.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.LazyParser.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/LazyGenotypesContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/SimpleAllele.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/StructuralVariantType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.Type.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.Validation.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContext.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextComparator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextUtils.JexlVCMatchExp.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/VariantContextUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/CompoundFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/FilteringIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/FilteringVariantContextIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/GenotypeQualityFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/HeterozygosityFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/JavascriptVariantFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/PassingVariantFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/SnpFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/VariantContextFilter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/filter/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/AsyncVariantContextWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2Encoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.AtomicInt.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.Flag.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.Float.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.GenericInts.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.IntArray.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.StringOrCharacter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.FTGenotypesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GTWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GenericSiteWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.GenotypesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.IGFGenotypesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.IntegerTypeGenotypesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.SiteWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.StaticallyTypeGenotypesWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/BCF2FieldWriterManager.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.ADAccessor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.Accessor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.DPAccessor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.GQAccessor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.PLAccessor.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/IntGenotypeFieldAccessors.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/Options.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/SortingVariantContextWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriter.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.OutputType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/variantcontext/writer/package-tree.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/AbstractVCFCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCF3Codec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFAltHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCompoundHeaderLine.SupportedHeaderLineType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFCompoundHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFConstants.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFContigHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFEncoder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFileReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFilterHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFFormatHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeader.HEADER_FIELDS.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineCount.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineTranslator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderLineType.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFHeaderVersion.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIDHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFInfoHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIterator.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFIteratorBuilder.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFMetaHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFPassThruTextTransformer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFPedigreeHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFPercentEncodedTextTransformer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFReader.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFRecordCodec.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSampleHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFSimpleHeaderLine.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFStandardHeaderLines.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFTextTransformer.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/VCFUtils.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-summary.html
/usr/share/doc/libhtsjdk-java/api/htsjdk/variant/vcf/package-tree.html
/usr/share/doc/libhtsjdk-java/api/index-all.html
/usr/share/doc/libhtsjdk-java/api/index.html
/usr/share/doc/libhtsjdk-java/api/jquery-ui.overrides.css
/usr/share/doc/libhtsjdk-java/api/legal/ASSEMBLY_EXCEPTION
/usr/share/doc/libhtsjdk-java/api/legal/jquery.md
/usr/share/doc/libhtsjdk-java/api/legal/jqueryUI.md
/usr/share/doc/libhtsjdk-java/api/member-search-index.js
/usr/share/doc/libhtsjdk-java/api/module-search-index.js
/usr/share/doc/libhtsjdk-java/api/overview-summary.html
/usr/share/doc/libhtsjdk-java/api/overview-tree.html
/usr/share/doc/libhtsjdk-java/api/package-search-index.js
/usr/share/doc/libhtsjdk-java/api/resources/glass.png
/usr/share/doc/libhtsjdk-java/api/resources/x.png
/usr/share/doc/libhtsjdk-java/api/script-dir/jquery-3.6.1.min.js
/usr/share/doc/libhtsjdk-java/api/script-dir/jquery-ui.min.css
/usr/share/doc/libhtsjdk-java/api/script-dir/jquery-ui.min.js
/usr/share/doc/libhtsjdk-java/api/script.js
/usr/share/doc/libhtsjdk-java/api/search.js
/usr/share/doc/libhtsjdk-java/api/serialized-form.html
/usr/share/doc/libhtsjdk-java/api/stylesheet.css
/usr/share/doc/libhtsjdk-java/api/tag-search-index.js
/usr/share/doc/libhtsjdk-java/api/type-search-index.js
/usr/share/lintian/overrides/libhtsjdk-java-doc