Balík: python3-presto (0.5.10-1)

[ Zdroj: presto  ]

toolkit for processing B and T cell sequences

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

Ostatné balíky súvisiace s balíkom python3-presto

• dep: python3

  interaktívny vysokoúrovňový objektovo orientovaný jazyk (predvolená verzia python3)

• dep: python3-biopython (>= 1.65)

  knižnica na bioinformatiku implementovaná v jazyku Python 3

• dep: python3-numpy (>= 1.8)

  schopnosti rýchlych polí do jazyka Python 3

• dep: python3-pandas (>= 0.15)

  údajové štruktúry „relačných“ dát alebo dát „s označením“ - Python 3

• dep: python3-scipy (>= 0.14)

  vedecké nástroje pre Python 3

Stiahnuť python3-presto

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
all	69.0 kB	487.0 kB	[zoznam súborov]