Balík: r-bioc-shortread (1.40.0-1)

[ Zdroj: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Ostatné balíky súvisiace s balíkom r-bioc-shortread

• dep: libc6 (>= 2.7)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc1 (>= 1:3.5)

  podporná knižnica GCC

• dep: libgomp1 (>= 4.2.1)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-3.5

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-base-core (>= 3.5.1-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.23.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  balík GNU R pre grafiku „Trellis“

• dep: r-cran-latticeextra

  balík GNU R s ďalšími grafickými zobrazeniami založenými na mriežke

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

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