Balík: python3-freecontact (1.1-4)
Odkazy pre python3-freecontact
Zdroje Debian:
Stiahnuť zdrojový balík python-freecontact:
- [python-freecontact_1.1-4.dsc]
- [python-freecontact_1.1.orig.tar.gz]
- [python-freecontact_1.1-4.debian.tar.xz]
Správcovia:
- Debian Med Packaging Team (Stránka QA, Konferencia)
- Laszlo Kajan (Stránka QA)
- Andreas Tille (Stránka QA)
- Alexandre Mestiashvili (Stránka QA)
Externé zdroje:
- Domovská stránka [rostlab.org]
Podobné balíky:
fast protein contact predictor - binding for Python3
FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.
This package contains the Python3 binding.
Ostatné balíky súvisiace s balíkom python3-freecontact
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- dep: libboost-python1.67.0
- knižnica Boost.Python
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- dep: libc6 (>= 2.17)
- knižnica GNU C - zdieľané knižnice
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libfreecontact0v5
- fast protein contact predictor library
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- dep: libgcc1 (>= 1:3.0)
- podporná knižnica GCC
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- dep: libstdc++6 (>= 5)
- štandardná knižnica C++ GNU v3
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- dep: python3 (<< 3.8)
- interaktívny vysokoúrovňový objektovo orientovaný jazyk (predvolená verzia python3)
- dep: python3 (>= 3.6~)
Stiahnuť python3-freecontact
Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
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arm64 | 29.9 kB | 236.0 kB | [zoznam súborov] |