Balík: libfreecontact-perl (0.08-7 a iné)

[ Zdroj: libfreecontact-perl  ]

fast protein contact predictor - binding for Perl

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Perl binding.

Značky: Software Development: Perl Development, Knižnice, Implementované v: implemented-in::c, implemented-in::perl, Role: Vývojová knižnica

Ostatné balíky súvisiace s balíkom libfreecontact-perl

• dep: libc6 (>= 2.17)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libfreecontact0v5

  fast protein contact predictor library

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: perl (>= 5.28.0-3)

  Practical Extraction and Report Language od Larryho Walla

• dep: perlapi-5.28.0

  virtuálny balík poskytovaný balíkom perl-base

Stiahnuť libfreecontact-perl

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
arm64	0.08-7+b1	71.1 kB	127.0 kB	[zoznam súborov]