Balík: discosnp (2.3.0-2)

[ Zdroj: discosnp  ]

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

Ostatné balíky súvisiace s balíkom discosnp

• dep: gatb-core

  Genome Analysis Toolbox with de-Bruijn graph

• dep: libc6 (>= 2.17)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgatbcore2 (>= 1.4.1+git20181225.44d5a44+dfsg)

  dynamic library of the Genome Analysis Toolbox

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libhdf5-103

  HDF5 (Hierarchical Data Format 5) - dynamické súbory - sériová verzia

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: python3

  interaktívny vysokoúrovňový objektovo orientovaný jazyk (predvolená verzia python3)

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

Stiahnuť discosnp

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
arm64	762.9 kB	1,584.0 kB	[zoznam súborov]