Balík: r-cran-surveillance (1.16.2-1)

[ Zdroj: r-cran-surveillance  ]

GNU R package for the Modeling and Monitoring of Epidemic Phenomena

Implementation of statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g., discrete-space setups such as the spatially enriched Susceptible-Exposed-Infectious-Recovered (SEIR) models, or continuous-space point process data such as the occurrence of infectious diseases. Main focus is on outbreak detection in count data time series originating from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences.

Currently, the package contains implementations of many typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Höhle and Paul (2008). A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Furthermore, inference methods for the retrospective infectious disease models in Held et al (2005), Held et al (2006), Paul et al (2008), Paul and Held (2011), Held and Paul (2012), and Meyer and Held (2014) are provided.

Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ('twinSIR', discrete space) and Meyer et al (2012) ('twinstim', continuous space).

The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion.

Note: Using the 'boda' algorithm requires the 'INLA' package, which is available from <http://www.r-inla.org/download>.

Značky: Pole: Medicine, Implementované v: GNU R, User Interface: interface::commandline, role::program

Ostatné balíky súvisiace s balíkom r-cran-surveillance

• dep: libc6 (>= 2.14)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  podporná knižnica GCC

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-3.5

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-base-core (>= 3.5.1-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-cran-mass

  balík MASS pre GNU R od Venable a Ripley

• dep: r-cran-matrix

  balík tried GNU R pre husté a riedke matice

• dep: r-cran-nlme

  balík GNU R na (ne-)lineárne modely zmiešaných efektov

• dep: r-cran-polycub (>= 0.6.0)

  GNU R Cubature over Polygonal Domains

• dep: r-cran-rcpp (>= 0.11.1)

  balík GNU R na hladkú integráciu R a C++

• dep: r-cran-sp (>= 1.0-15)

  GNU R classes and methods for spatial data

• dep: r-cran-spatstat (>= 1.36-0)

  GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests

• dep: r-cran-xtable (>= 1.7-0)

  GNU R - donútenie dát do tabuliek LaTeXu a HTML

• rec: r-cran-maxlik

  GNU R maximum likelihood estimation

• rec: r-cran-memoise

  Memoise functions

• rec: r-cran-spdep

  GNU R spatial dependence: weighting schemes, statistics and models

• rec: r-cran-testthat (>= 0.10.0)

  GNU R testsuite

• sug: r-cran-animation

  GNU R gallery of animations and utilities to create animations

• sug: r-cran-coda

  Output analysis and diagnostics for MCMC simulations in R

• sug: r-cran-colorspace

  GNU R manipulácia s priestorom farieb

• sug: r-cran-ggplot2

  implementácia Gramatiky grafiky

• sug: r-cran-gridextra (>= 2.0.0)

  GNU R - balík s rozšíreniami balíka grid

• sug: r-cran-gsl

  GNU R wrapper for the GNU Scientific Library

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-lattice

  balík GNU R pre grafiku „Trellis“

• sug: r-cran-maptools

  GNU R Tools for reading and handling spatial objects

• sug: r-cran-msm

  GNU R viacstavové Markovove a skryté Markovove modely v spojitom čase

• sug: r-cran-numderiv

  GNU R package for accurate numerical derivatives

• sug: r-cran-polyclip

  GNU R Polygon Clipping

• sug: r-cran-quadprog

  GNU R package for solving quadratic programming problems

• sug: r-cran-scales

  škálovacie funkcie na vizualizáciu

• sug: r-cran-spc

  GNU R Statistical Process Control

• sug: r-cran-testthat (>= 0.11.0)

  GNU R testsuite

• sug: r-cran-xts

  GNU R package for time series analysis -- xts

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