Balík: r-bioc-scran (1.18.5+dfsg-1)

[ Zdroj: r-bioc-scran  ]

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Ostatné balíky súvisiace s balíkom r-bioc-scran

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  knižnica rutín lineárnej algebry, verzia 3 - zdieľaná knižnica

  alebo liblapack.so.3

  virtuálny balík poskytovaný balíkom libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.12

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocneighbors

  Nearest Neighbor Detection for Bioconductor Packages

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-bluster

  Clustering Algorithms for Bioconductor

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-matrix

  balík tried GNU R pre husté a riedke matice

• dep: r-cran-rcpp

  balík GNU R na hladkú integráciu R a C++

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• rec: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• rec: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• rec: r-cran-dynamictreecut

  Methods for Detection of Clusters in Hierarchical Clustering

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

Stiahnuť r-bioc-scran

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1,115.4 kB	1,599.0 kB	[zoznam súborov]
arm64	1,098.6 kB	1,571.0 kB	[zoznam súborov]
armel	1,096.6 kB	1,537.0 kB	[zoznam súborov]
armhf	1,096.0 kB	1,465.0 kB	[zoznam súborov]
i386	1,118.8 kB	1,609.0 kB	[zoznam súborov]
mips64el	1,096.0 kB	1,710.0 kB	[zoznam súborov]
mipsel	1,097.8 kB	1,651.0 kB	[zoznam súborov]
ppc64el	1,114.8 kB	1,687.0 kB	[zoznam súborov]
s390x	1,105.6 kB	1,619.0 kB	[zoznam súborov]