Balík: qcat (1.1.0-2)

[ Zdroj: qcat  ]

demultiplexing Oxford Nanopore reads from FASTQ files

Qcat is a command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files. It accepts basecalled FASTQ files and splits the reads into separate FASTQ files based on their barcode. Qcat makes the demultiplexing algorithms used in albacore/guppy and EPI2ME available to be used locally with FASTQ files. Currently qcat implements the EPI2ME algorithm.

Ostatné balíky súvisiace s balíkom qcat

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-parasail (>= 1.2-3)

  Python3 bindings for the parasail C library

• dep: python3-six

  knižnica na kompatibilitu Pythonu 2 a 3 (rozhranie Python 3)

• dep: python3-yaml

  spracovanie a tvorbu YAML v jazyku Python 3

• sug: qcat-examples

  demultiplexing Oxford Nanopore reads from FASTQ files (examples)

Stiahnuť qcat

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
all	30.3 kB	269.0 kB	[zoznam súborov]