Balík: ncbi-epcr (2.3.12-1-9)

[ Zdroj: epcr  ]

Tool to test a DNA sequence for the presence of sequence tagged sites

Electronic PCR (e-PCR) is computational procedure that is used to identify sequence tagged sites(STSs), within DNA sequences. e-PCR looks for potential STSs in DNA sequences by searching for subsequences that closely match the PCR primers and have the correct order, orientation, and spacing that could represent the PCR primers used to generate known STSs.

The new version of e-PCR implements a fuzzy matching strategy. To reduce likelihood that a true STS will be missed due to mismatches, multiple discontiguous words may be used instead of a single exact word. Each of this word has groups of significant positions separated by 'wildcard' positions that are not required to match. In addition, it is also possible to allow gaps in the primer alignments.

The main motivation for implementing reverse searching (called Reverse e-PCR) was to make it feasible to search the human genome sequence and other large genomes. The new version of e-PCR provides a search mode using a query sequence against a sequence database.

This program is retired upstream and it is suggested to use Primer-Blast

 https://www.ncbi.nlm.nih.gov/tools/primer-blast/

instead.

Značky: Pole: Biológia, Bioinformatika, Implementované v: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::checking, use::searching, Supports Format: Plain Text, Works with: Need an extra tag

Ostatné balíky súvisiace s balíkom ncbi-epcr

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [nie amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [amd64, s390x]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [nie amd64, armel, armhf, s390x]

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• sug: bioperl

  nástroje jazyka Perl na výpočtovú molekulárnu biológiu

Stiahnuť ncbi-epcr

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	164.4 kB	496.0 kB	[zoznam súborov]
arm64	153.9 kB	460.0 kB	[zoznam súborov]
armel	143.5 kB	416.0 kB	[zoznam súborov]
armhf	144.3 kB	332.0 kB	[zoznam súborov]
i386	172.0 kB	512.0 kB	[zoznam súborov]
mips64el	162.7 kB	594.0 kB	[zoznam súborov]
mipsel	160.7 kB	542.0 kB	[zoznam súborov]
ppc64el	167.9 kB	692.0 kB	[zoznam súborov]
s390x	153.5 kB	496.0 kB	[zoznam súborov]