Balík: hhsuite (3.3.0+ds-4 a iné)

[ Zdroj: hhsuite  ]

sensitive protein sequence searching based on HMM-HMM alignment

HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

This package contains HHsearch and HHblits among other programs and utilities.

HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous proteins. HHsearch is often used for protein structure prediction to detect homologous templates and to build highly accurate query-template pairwise alignments for homology modeling.

HHblits can build high-quality MSAs starting from single sequences or from MSAs. It transforms these into a query HMM and, using an iterative search strategy, adds significantly similar sequences from the previous search to the updated query HMM for the next search iteration. Compared to PSI-BLAST, HHblits is faster, up to twice as sensitive and produces more accurate alignments.

Ostatné balíky súvisiace s balíkom hhsuite

• dep: hhsuite-data (= 3.3.0+ds-4)

  sensitive protein sequence searching based on HMM-HMM alignment (data)

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf, ppc64el]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libstdc++6 (>= 9)

  štandardná knižnica C++ GNU v3

• dep: perl

  Practical Extraction and Report Language od Larryho Walla

• dep: python3

  interactive high-level object-oriented language (default python3 version)

Stiahnuť hhsuite

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	3.3.0+ds-4+b3	53,410.1 kB	463,000.0 kB	[zoznam súborov]
arm64	3.3.0+ds-4+b3	10,089.7 kB	76,655.0 kB	[zoznam súborov]
armel	3.3.0+ds-4+b3	10,080.8 kB	77,050.0 kB	[zoznam súborov]
armhf	3.3.0+ds-4+b3	10,046.9 kB	75,178.0 kB	[zoznam súborov]
i386	3.3.0+ds-4+b3	71,759.6 kB	622,971.0 kB	[zoznam súborov]
mips64el	3.3.0+ds-4+b3	24,354.6 kB	95,023.0 kB	[zoznam súborov]
mipsel	3.3.0+ds-4+b3	10,072.4 kB	78,716.0 kB	[zoznam súborov]
ppc64el	3.3.0+ds-4+b3	10,277.3 kB	79,371.0 kB	[zoznam súborov]