Balík: glam2 (1064-9)

[ Zdroj: glam2  ]

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs.

This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences.

The package includes these programs:

 glam2:       discovering motifs shared by a set of sequences;
 glam2scan:   finding matches, in a sequence database, to a motif discovered
              by glam2;
 glam2format: converting glam2 motifs to  standard alignment formats;
 glam2mask:   masking glam2 motifs out of sequences, so that weaker motifs
              can be found;
 glam2-purge: removing highly similar members of a set of sequences.

In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Značky: Pole: Biológia, Bioinformatika, Implementované v: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Ostatné balíky súvisiace s balíkom glam2

• dep: libc6 (>= 2.29)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libfftw3-double3 (>= 3.3.5)

  knižnica na výpočet rýchlych fourierovych transformácií - dvojitá presnosť

Stiahnuť glam2

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	230.0 kB	507.0 kB	[zoznam súborov]
arm64	222.7 kB	491.0 kB	[zoznam súborov]
armel	216.8 kB	474.0 kB	[zoznam súborov]
armhf	214.4 kB	402.0 kB	[zoznam súborov]
i386	233.3 kB	518.0 kB	[zoznam súborov]
mips64el	227.4 kB	543.0 kB	[zoznam súborov]
mipsel	226.3 kB	513.0 kB	[zoznam súborov]
ppc64el	242.6 kB	763.0 kB	[zoznam súborov]
s390x	226.3 kB	515.0 kB	[zoznam súborov]