Balík: r-bioc-rsamtools (2.6.0-1)

[ Zdroj: r-bioc-rsamtools  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Ostatné balíky súvisiace s balíkom r-bioc-rsamtools

• dep: libc6 (>= 2.15)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libcurl4 (>= 7.18.0)

  jednoducho použiteľná klientská knižnica na prenos URL (OpenSSL)

• dep: libgcc-s1 (>= 3.5)

  podporná knižnica GCC

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.12

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-biocgenerics (>= 0.25.1)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.1.3)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rhtslib (>= 1.17.7)

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.19.7)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-bitops

  balík GNU R implementujúci operácie po bitoch

• rec: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

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