Balík: pizzly (0.37.3+ds-5)

[ Zdroj: pizzly  ]

Identifies gene fusions in RNA sequencing data

For the interpretation of the transcriptome (the abundance and sequence of RNA) of tomour cells one is particularly interested in transcripts that cannot be mapped to single genes but that are seen to be fused as parts from two genes. Likely eplanations are chromosomal translocations.

Pizzly can identify novel such peculiarities, building on interpretations on variable splicing by the tool kallisto. Both tools are elements of the bcbio workflow.

Ostatné balíky súvisiace s balíkom pizzly

• dep: kallisto

  near-optimal RNA-Seq quantification

• dep: libc6 (>= 2.30)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  podporná knižnica GCC

• dep: libstdc++6 (>= 10.2)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• rec: python3-h5py

  general-purpose Python interface to hdf5

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
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