Balík: r-bioc-dexseq (1.36.0+dfsg-1)

[ Zdroj: r-bioc-dexseq  ]

GNU R inference of differential exon usage in RNA-Seq

The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.

Ostatné balíky súvisiace s balíkom r-bioc-dexseq

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.12

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-deseq2 (>= 1.9.11)

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• dep: r-bioc-geneplotter

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges (>= 1.23.7)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.5.17)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-rcolorbrewer

  balík GNU R poskytujúci vhodné palety farieb

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• dep: r-cran-stringr

  uľahčenie práce s reťazcami

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicfeatures (>= 1.13.29)

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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