Balík: r-bioc-monocle (2.18.0-1)

[ Zdroj: r-bioc-monocle  ]

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

Ostatné balíky súvisiace s balíkom r-bioc-monocle

• dep: libc6 (>= 2.14)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: libstdc++6 (>= 5.2)

  štandardná knižnica C++ GNU v3

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.12

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocviews

  Categorized views of R package repositories

• dep: r-bioc-hsmmsinglecell (>= 0.101.5)

  Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts

• dep: r-bioc-limma

  linear models for microarray data

• dep: r-cran-cluster

  balík GNU R na klastrovú analýzu, ktorý napísali Rousseeuw et al

• dep: r-cran-combinat

  GNU R package with utilities for combinatorics

• dep: r-cran-ddrtree (>= 0.1.4)

  GNU R learning principal graphs with DDRTree

• dep: r-cran-densityclust (>= 0.3)

  GNU R clustering by fast search and find of density peaks

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-fastica

  GNU R package for ICA and Projection Pursuit

• dep: r-cran-ggplot2 (>= 1.0.0)

  implementácia Gramatiky grafiky

• dep: r-cran-igraph (>= 1.0.1)

  GNU R network analysis and visualization

• dep: r-cran-irlba (>= 2.0.0)

  GNU R fast truncated SVD, PCA and symmetric eigendecomposition

• dep: r-cran-mass

  balík MASS pre GNU R od Venable a Ripley

• dep: r-cran-matrix (>= 1.2-6)

  balík tried GNU R pre husté a riedke matice

• dep: r-cran-matrixstats

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-plyr

  nástroje na rozdeľovanie, aplikovanie a kombinovanie dát

• dep: r-cran-proxy

  GNU R distance and similarity measures

• dep: r-cran-qlcmatrix

  GNU R utility sparse matrix functions for quantitative language

• dep: r-cran-rann (>= 2.5)

  Fast Nearest Neighbour Search Using L2 Metric

• dep: r-cran-rcpp (>= 0.12.0)

  balík GNU R na hladkú integráciu R a C++

• dep: r-cran-reshape2

  flexibilná zmena tvaru dát - reboot balíka reshape

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-slam

  GNU R sparse lighweight arrays and matrices package

• dep: r-cran-stringr

  uľahčenie práce s reťazcami

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-vgam (>= 1.0-6)

  GNU R package for estimating vector generalized additive models

• dep: r-cran-viridis

  GNU R - balík máp farieb z matplotlib

• rec: r-cran-testthat

  GNU R testsuite

• sug: r-bioc-destiny

  GNU R diffusion maps

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-cran-hmisc

  rozličné funkcie pre GNU R, ktoré napísal Frank Harrell

• sug: r-cran-knitr

  balík GNU R na dynamickú tvorbu zostáv pomocou Literate Programming

• sug: r-cran-seurat

  Tools for Single Cell Genomics

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1,435.6 kB	1,746.0 kB	[zoznam súborov]