Balík: megan-ce (6.21.1+dfsg-2)

[ Zdroj: megan-ce  ]

interactive tool to explore and analyse microbiome sequencing data

MEGAN Community Edition is a shotgun sequencer to analyze microbiome samples. It is a rewrite and extension of the widely-used microbiome analysis tool MEGAN so as to facilitate the interactive analysis of the taxonomic and functional content of very large microbiome datasets. Other new features include a functional classifier called InterPro2GO, gene-centric read assembly, principal coordinate analysis of taxonomy and function, and support for metadata. By integrating MEGAN CE with the high-throughput DNA-to-protein alignment tool DIAMOND a powerful and complete pipeline for the analysis of metagenome shotgun sequences can be provided.

Ostatné balíky súvisiace s balíkom megan-ce

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libcolt-free-java

  scalable scientific and technical computing in Java

• dep: libcommons-math3-java

  odľahčené matematické a štatistické komponenty pre jazyk Java

• dep: libgoogle-gson-java

  konvertuje objekty jazyka Java do ich reprezentácie v JSON

• dep: libjama-java

  Basic linear algebra library for Java

• dep: libjbcrypt-java

  Java implementation of OpenBSD's Blowfish hashing

• dep: libjloda-java

  Java library of data structures and algorithms for bioinformatics

• dep: libopenjfx-java

  JavaFX/OpenJFX - platforma bohatých klientských aplikácií pre Javu - knižnice Java

• dep: libsis-jhdf5-java

  easy-to-use HDF library for Java

• dep: libxerial-sqlite-jdbc-java

  Xerial's SQLite JDBC Driver

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