Balík: r-bioc-grohmm (1.32.0-1)

[ Zdroj: r-bioc-grohmm  ]

GRO-seq Analysis Pipeline

This BioConductor package provides a pipeline for the analysis of GRO- seq data. Among the more advanced features, r-bioc-grohmm predicts the boundaries of transcriptional activity across the genome de novo using a two-state hidden Markov model (HMM).

The used model essentially divides the genome into transcribed and non- transcribed regions in a strand specific manner. HMMs are used to identify the leading edge of Pol II at genes activated by a stimulus in GRO-seq time course data. This approach allows the genome-wide interrogation of transcription rates in cells.

Ostatné balíky súvisiace s balíkom r-bioc-grohmm

• dep: libc6 (>= 2.14) [amd64]

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [nie amd64, arm64, ppc64el]

• dep: r-api-4.0

  virtuálny balík poskytovaný balíkom r-base-core

• dep: r-api-bioc-3.16

  virtuálny balík poskytovaný balíkom r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  jadro GNU R na štatistické výpočty a grafický systém

• dep: r-bioc-genomeinfodb

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rtracklayer (>= 1.39.7)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-mass

  balík MASS pre GNU R od Venable a Ripley

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

Stiahnuť r-bioc-grohmm

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	4,333.2 kB	4,503.0 kB	[zoznam súborov]
arm64	4,331.0 kB	4,511.0 kB	[zoznam súborov]
armel	4,331.6 kB	4,510.0 kB	[zoznam súborov]
armhf	4,328.5 kB	4,510.0 kB	[zoznam súborov]
i386	4,334.0 kB	4,502.0 kB	[zoznam súborov]
mips64el	4,330.4 kB	4,514.0 kB	[zoznam súborov]
mipsel	4,331.4 kB	4,513.0 kB	[zoznam súborov]
ppc64el	4,336.3 kB	4,511.0 kB	[zoznam súborov]
s390x	4,331.4 kB	4,499.0 kB	[zoznam súborov]