Balík: python3-freecontact (1.1-6 a iné)

[ Zdroj: python-freecontact  ]

fast protein contact predictor - binding for Python3

FreeContact is a protein residue contact predictor optimized for speed. Its input is a multiple sequence alignment. FreeContact can function as an accelerated drop-in for the published contact predictors EVfold-mfDCA of DS. Marks (2011) and PSICOV of D. Jones (2011).

FreeContact is accelerated by a combination of vector instructions, multiple threads, and faster implementation of key parts. Depending on the alignment, 8-fold or higher speedups are possible.

A sufficiently large alignment is required for meaningful results. As a minimum, an alignment with an effective (after-weighting) sequence count bigger than the length of the query sequence should be used. Alignments with tens of thousands of (effective) sequences are considered good input.

jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite can be used to generate the alignments, for example.

This package contains the Python3 binding.

Ostatné balíky súvisiace s balíkom python3-freecontact

• dep: libboost-python1.74.0 (>= 1.74.0) [mips64el]

  knižnica Boost.Python

  dep: libboost-python1.74.0 (>= 1.74.0+ds1) [nie mips64el]

• dep: libboost-python1.74.0-py311

  virtuálny balík poskytovaný balíkom libboost-python1.74.0

• dep: libc6 (>= 2.32)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libfreecontact0v5 (>= 1.0.21)

  fast protein contact predictor library

• dep: libgcc-s1 (>= 3.0) [nie armhf]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armhf]

• dep: libstdc++6 (>= 11)

  štandardná knižnica C++ GNU v3

• dep: python3 (<< 3.12)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.11~)

Stiahnuť python3-freecontact

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1.1-6+b4	71.4 kB	248.0 kB	[zoznam súborov]
arm64	1.1-6+b4	69.0 kB	272.0 kB	[zoznam súborov]
armhf	1.1-6+b4	67.2 kB	215.0 kB	[zoznam súborov]
i386	1.1-6+b4	73.0 kB	247.0 kB	[zoznam súborov]
mips64el	1.1-6+b4	68.9 kB	278.0 kB	[zoznam súborov]
mipsel	1.1-6+b4	68.4 kB	276.0 kB	[zoznam súborov]
ppc64el	1.1-6+b4	72.4 kB	272.0 kB	[zoznam súborov]
s390x	1.1-6+b4	68.9 kB	248.0 kB	[zoznam súborov]