Balík: libjellyfish-perl (2.3.0-15 a iné)

[ Zdroj: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Značky: Software Development: Perl Development, Knižnice, Implementované v: implemented-in::c, implemented-in::perl, Role: Vývojová knižnica

Ostatné balíky súvisiace s balíkom libjellyfish-perl

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  podporná knižnica GCC

• dep: perl (>= 5.36.0-7)

  Practical Extraction and Report Language od Larryho Walla

• dep: perlapi-5.36.0

  virtuálny balík poskytovaný balíkom perl-base

Stiahnuť libjellyfish-perl

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
mips64el	2.3.0-15+b3	47.5 kB	234.0 kB	[zoznam súborov]