Balík: art-nextgen-simulation-tools (20160605+dfsg-4 a iné)

[ Zdroj: art-nextgen-simulation-tools  ]

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

Ostatné balíky súvisiace s balíkom art-nextgen-simulation-tools

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [nie armel, armhf]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) - balík knižnice

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  štandardná knižnica C++ GNU v3

  dep: libstdc++6 (>= 9) [nie armel, armhf]

• sug: art-nextgen-simulation-tools-profiles

  profiles for art simulation tools

Stiahnuť art-nextgen-simulation-tools

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	20160605+dfsg-4+b3	1,645.8 kB	9,101.0 kB	[zoznam súborov]
arm64	20160605+dfsg-4+b3	1,630.6 kB	9,161.0 kB	[zoznam súborov]
armel	20160605+dfsg-4+b3	1,629.3 kB	9,158.0 kB	[zoznam súborov]
armhf	20160605+dfsg-4+b3	1,629.8 kB	9,030.0 kB	[zoznam súborov]
i386	20160605+dfsg-4+b3	1,648.8 kB	9,122.0 kB	[zoznam súborov]
mips64el	20160605+dfsg-4+b3	1,639.1 kB	9,241.0 kB	[zoznam súborov]
mipsel	20160605+dfsg-4+b3	1,641.2 kB	9,236.0 kB	[zoznam súborov]
ppc64el	20160605+dfsg-4+b3	1,643.6 kB	9,417.0 kB	[zoznam súborov]
s390x	20160605+dfsg-4+b3	1,636.0 kB	9,093.0 kB	[zoznam súborov]