Balík: stringtie (2.2.1+ds-2)

[ Zdroj: stringtie  ]

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Ostatné balíky súvisiace s balíkom stringtie

• dep: libc6 (>= 2.33)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  podporná knižnica GCC

• dep: libhts3 (>= 1.13)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 4.1.1)

  štandardná knižnica C++ GNU v3

• rec: stringtie-examples

  Balík nie je dostupný

• sug: cufflinks

  Transcript assembly, differential expression and regulation for RNA-Seq

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
armel	334.3 kB	952.0 kB	[zoznam súborov]